Research workbench
Ag repetition attached to a compact I-motif clip at 3'-end
Analyse Ag repetition attached to a compact I-motif clip at 3'-end in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7BLM
- Type
- DNA
- Length
- 28 nucleotides
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AGAG(CH+)C(CH+); AGAGC(CH+)C
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | AGAG(CH+)C(CH+) | dna | 7 | — | — |
| C, D | AGAGC(CH+)C | dna | 7 | — | — |
Interfaces
6 interfaces between chains.
- B–D · 488 Ų buried · 37 hydrogen bonds · nucleic-nucleic
- A–C · 470 Ų buried · 37 hydrogen bonds · nucleic-nucleic
- B–C · 417 Ų buried · 12 hydrogen bonds · nucleic-nucleic
- A–D · 407 Ų buried · 12 hydrogen bonds · nucleic-nucleic
- A–B · 371 Ų buried · 8 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 6 modified (nucleotide modification).
Compared structures
- 7BLM · AG repetition attached to a compact i-motif clip at 3'-end · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7BLM · PDBe 7BLM
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