Research workbench

Crystal structure of V22WRAP-T, a 7-bladed designer protein

Analyse Crystal structure of V22WRAP-T, a 7-bladed designer protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7BIF
Type: protein
Length: 1,144 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: V22WRAP-T
UniProt: B2J0I0
Pockets: 10 · best druggability 0.88

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	V22WRAP-T	protein	286	0% helix, 53% strand	B2J0I0

Pockets

10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1054	0.88	0.90	88	empty
2	1144	0.83	0.84	83	empty
3	346	0.80	0.90	46	empty
4	902	0.79	0.82	59	empty
5	74	0.55	0.87	21	empty

Interfaces

6 interfaces between chains.

B–D · 1278 Å² buried · 57 hydrogen bonds · protein-protein
A–C · 425 Å² buried · 13 hydrogen bonds · protein-protein
C–D · 326 Å² buried · 7 hydrogen bonds · protein-protein
B–C · 320 Å² buried · 3 hydrogen bonds · protein-protein
A–B · 226 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

7BIF · Crystal structure of v22WRAP-T, a 7-bladed designer protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B2J0I0
Elsewhere: RCSB PDB 7BIF · PDBe 7BIF · UniProt B2J0I0

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.