Research workbench
Ga repetition with I-motif clip at 5'-end
Analyse Ga repetition with I-motif clip at 5'-end in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7BI0
- Type
- DNA
- Length
- 28 nucleotides
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- (CH+)C(CH+)GAGA; C(CH+)CGAGA
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | (CH+)C(CH+)GAGA | dna | 7 | — | — |
| C, D | C(CH+)CGAGA | dna | 7 | — | — |
Interfaces
6 interfaces between chains.
- B–D · 430 Ų buried · 33 hydrogen bonds · nucleic-nucleic
- A–C · 428 Ų buried · 31 hydrogen bonds · nucleic-nucleic
- A–D · 321 Ų buried · 14 hydrogen bonds · nucleic-nucleic
- B–C · 319 Ų buried · 9 hydrogen bonds · nucleic-nucleic
- A–B · 257 Ų buried · 5 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 6 modified (nucleotide modification).
Compared structures
- 7BI0 · GA repetition with i-motif clip at 5'-end · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7BI0 · PDBe 7BI0
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