Research workbench
In situ assembled salmonella flgd hook cap complex
Analyse In situ assembled salmonella flgd hook cap complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7BHQ
- Type
- protein
- Length
- 1,010 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Basal-body rod modification protein flgd
- UniProt
- P0A1I9
- Pockets
- 7 · best druggability 0.86
Structure
electron microscopy · 4 distinct chains · 26% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Basal-body rod modification protein flgd | protein | 201 | 26% helix, 35% strand | P0A1I9 |
| B, E | Basal-body rod modification protein flgd | protein | 204 | 27% helix, 35% strand | P0A1I9 |
| C | Basal-body rod modification protein flgd | protein | 199 | 26% helix, 37% strand | P0A1I9 |
| D | Basal-body rod modification protein flgd | protein | 202 | 26% helix, 36% strand | P0A1I9 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1130 | 0.86 | 0.87 | 103 | empty |
| 2 | 396 | 0.69 | 0.81 | 55 | empty |
| 3 | 56 | 0.58 | 0.91 | 18 | empty |
| 4 | 75 | 0.42 | 0.80 | 15 | empty |
| 5 | 65 | 0.34 | 0.77 | 13 | empty |
Interfaces
6 interfaces between chains.
- A–B · 1583 Ų buried · 14 hydrogen bonds · protein-protein
- A–E · 1542 Ų buried · 19 hydrogen bonds · protein-protein
- B–C · 1510 Ų buried · 11 hydrogen bonds · protein-protein
- D–E · 1438 Ų buried · 12 hydrogen bonds · protein-protein
- C–D · 1272 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 7BHQ · In situ assembled Salmonella FlgD hook cap complex · the same entry in another collection · chain E against E, TM-score 1.00
- P0A1I9 · AlphaFold monomer V2.0 prediction for basal-body rod modification protein flgd (P0A1I9) · a predicted model of the same protein · chain A against A, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A1I9
- Elsewhere: RCSB PDB 7BHQ · PDBe 7BHQ · UniProt P0A1I9
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