Research workbench
Kbv activated particle at acidic pH
Analyse Kbv activated particle at acidic pH in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7BG8
- Type
- protein
- Length
- 698 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Structural polyprotein
- UniProt
- Q80AG2, Q6SQI6
- Pockets
- 9 · best druggability 0.60
Structure
electron microscopy · 4 distinct chains · 8% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Structural polyprotein | protein | 198 | 7% helix, 19% strand | Q80AG2 |
| C | Structural polyprotein | protein | 286 | 6% helix, 26% strand | Q80AG2 |
| B | Structural polyprotein | protein | 197 | 9% helix, 28% strand | Q80AG2 |
| D | Structural polyprotein | protein | 17 | 47% helix, 0% strand | Q6SQI6 |
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 101 | 0.60 | 0.87 | 31 | empty |
| 2 | 93 | 0.54 | 0.85 | 19 | empty |
| 3 | 64 | 0.47 | 0.84 | 15 | empty |
| 4 | 101 | 0.45 | 0.79 | 16 | empty |
| 5 | 149 | 0.43 | 0.75 | 23 | empty |
Interfaces
4 interfaces between chains.
- A–C · 4047 Ų buried · 50 hydrogen bonds · protein-protein
- C–B · 1552 Ų buried · 16 hydrogen bonds · protein-protein
- A–B · 1003 Ų buried · 9 hydrogen bonds · protein-protein
- C–D · 201 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 7BG8 · KBV activated particle at acidic pH · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q80AG2
- Every structure of UniProt Q6SQI6
- Elsewhere: RCSB PDB 7BG8 · PDBe 7BG8 · UniProt Q80AG2 · UniProt Q6SQI6
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