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Structure of the M198F M298F double mutant of the streptomyces coelicolor small laccase T1 copper site
Analyse Structure of the M198F M298F double mutant of the streptomyces coelicolor small… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7BFM
- Type
- protein
- Length
- 564 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative copper oxidase
- UniProt
- Q9XAL8
- Ligands
- CU
- Pockets
- 4 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Putative copper oxidase | protein | 282 | 6% helix, 41% strand | Q9XAL8 |
Ligands and binding sites
- CU · Copper (II) ion · metal · 8 copies · chains A, C
- PG4 · Tetraethylene glycol · additive · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 758 | 0.63 | 0.73 | 89 | empty |
| 2 | 70 | 0.31 | 0.75 | 14 | empty |
| 3 | 64 | 0.31 | 0.75 | 14 | empty |
| 4 | 52 | 0.27 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–C · 1155 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 7BFM · Structure of the M198F M298F double mutant of the Streptomyces coelicolor small laccase… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9XAL8
- Elsewhere: RCSB PDB 7BFM · PDBe 7BFM · UniProt Q9XAL8
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