Research workbench
X-ray structure of ss-RNase-2
Analyse X-ray structure of ss-RNase-2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7BFK
- Type
- protein
- Length
- 246 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Angiogenin-1
- UniProt
- B5XAZ0
- Pockets
- 5 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Angiogenin-1 | protein | 125 | 26% helix, 38% strand | B5XAZ0 |
| B | Angiogenin-1 | protein | 121 | 25% helix, 39% strand | B5XAZ0 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.66 | 0.96 | 20 | empty |
| 2 | 159 | 0.56 | 0.81 | 22 | empty |
| 3 | 158 | 0.52 | 0.79 | 30 | empty |
| 4 | 85 | 0.38 | 0.77 | 24 | empty |
| 5 | 57 | 0.28 | 0.74 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 895 Ų buried · 11 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 7BFK · X-ray structure of SS-RNase-2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5XAZ0
- Elsewhere: RCSB PDB 7BFK · PDBe 7BFK · UniProt B5XAZ0
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