Research workbench
Circular permutant of ribosomal protein S6, P54-55 truncated, Y4A mutant.
Analyse Circular permutant of ribosomal protein S6, P54-55 truncated, Y4A mutant. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7BFD
- Type
- protein
- Length
- 1,008 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 30S ribosomal protein S6,30S ribosomal protein S6
- UniProt
- Q5SLP8
- Pockets
- 13 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, J, K, L, C, D, E, F, G, H, I | 30S ribosomal protein S6,30S ribosomal protein S6 | protein | 84 | 36% helix, 38% strand | Q5SLP8 |
Pockets
13 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 198 | 0.46 | 0.74 | 36 | empty |
| 2 | 130 | 0.45 | 0.77 | 21 | empty |
| 3 | 162 | 0.42 | 0.74 | 34 | empty |
| 4 | 152 | 0.40 | 0.73 | 24 | empty |
| 5 | 116 | 0.39 | 0.75 | 20 | empty |
Interfaces
11 interfaces between chains.
- H–I · 689 Ų buried · 15 hydrogen bonds · protein-protein
- D–I · 678 Ų buried · 14 hydrogen bonds · protein-protein
- J–K · 654 Ų buried · 11 hydrogen bonds · protein-protein
- K–L · 642 Ų buried · 13 hydrogen bonds · protein-protein
- J–F · 631 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 7BFD · Circular permutant of ribosomal protein S6, P54-55 truncated, Y4A mutant. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SLP8
- Elsewhere: RCSB PDB 7BFD · PDBe 7BFD · UniProt Q5SLP8
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