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Crystal structure of the receptor binding domain of SARS-cov-2 spike glycoprotein in a ternary complex with covox-253H55L and covox-75 fabs

Analyse Crystal structure of the receptor binding domain of SARS-cov-2 spike… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7BEO
Type: protein
Length: 2,105 residues
Chains: 10
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0DTC2
Ligands: NAG, FUC, CL

Structure

x-ray diffraction · 6 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
R	—	protein	183	—	P0DTC2
H, C	—	protein	219	—	—
L, D	—	protein	214	—	—
A, E	—	protein	224	—	—
B, F	—	protein	213	—	—
X	—	protein	182	—	P0DTC2

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 7 copies · chains H, X, C, R
FUC · alpha-L-fucopyranose · sugar · 3 copies · chains H, C
CL · Chloride ion · ion · chains C, D
ACT · Acetate ion · additive · 9 copies · chains R, L, A, B, C, E, D, X
GOL · Glycerol · additive · 2 copies · chains H, A, X

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7BEO · Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in a… · the same entry in another collection · chain X against X, TM-score 1.00

Analyse

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Every structure of UniProt P0DTC2
Elsewhere: RCSB PDB 7BEO · PDBe 7BEO · UniProt P0DTC2

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