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Structure of the streptomyces coelicolor small laccase - cubic crystal form

Analyse Structure of the streptomyces coelicolor small laccase - cubic crystal form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7BDN
Type: protein
Length: 554 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative copper oxidase
UniProt: Q9XAL8
Ligands: CU
Pockets: 3 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Putative copper oxidase	protein	277	5% helix, 42% strand	Q9XAL8

Ligands and binding sites

CU · Copper (II) ion · metal · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	665	0.61	0.73	86	empty
2	57	0.31	0.76	14	empty
3	67	0.31	0.75	14	empty

Interfaces

1 interface between chains.

A–B · 1070 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

7BDN · Structure of the Streptomyces coelicolor small laccase - cubic crystal form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9XAL8
Elsewhere: RCSB PDB 7BDN · PDBe 7BDN · UniProt Q9XAL8

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