Research workbench
Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain DPN7T in complex with galactonate
Analyse Crystal structure of the sugar acid binding protein dctpam from advenella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7BCR
- Type
- protein
- Length
- 310 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative trap transporter solute receptor dctp
- UniProt
- R4JTF7
- Ligands
- 2Q2
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative trap transporter solute receptor dctp | protein | 310 | 53% helix, 19% strand | R4JTF7 |
Ligands and binding sites
- 2Q2 · L-galactonic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.72 | 0.97 | 22 | 2Q2 |
| 2 | 61 | 0.33 | 0.76 | 11 | empty |
Compared structures
- 7BCR · Crystal structure of the sugar acid binding protein DctPAm from Advenella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt R4JTF7
- Elsewhere: RCSB PDB 7BCR · PDBe 7BCR · UniProt R4JTF7
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