Research workbench
Structure of the tagl peptidoglycan binding domain from eaec T6SS
Analyse Structure of the tagl peptidoglycan binding domain from eaec T6SS in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7BBA
- Type
- protein
- Length
- 449 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative type VI secretion protein
- UniProt
- D3GUV9
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.40
Structure
x-ray diffraction · 3 distinct chains · 38% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative type VI secretion protein | protein | 112 | 39% helix, 16% strand | D3GUV9 |
| B, C | Putative type VI secretion protein | protein | 113 | 37% helix, 18% strand | D3GUV9 |
| D | Putative type VI secretion protein | protein | 111 | 39% helix, 16% strand | D3GUV9 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 9 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 131 | 0.40 | 0.75 | 22 | empty |
| 2 | 152 | 0.40 | 0.73 | 22 | SO4 |
| 3 | 119 | 0.38 | 0.74 | 19 | empty |
| 4 | 101 | 0.38 | 0.75 | 17 | empty |
Interfaces
3 interfaces between chains.
- A–B · 652 Ų buried · 6 hydrogen bonds · protein-protein
- C–D · 641 Ų buried · 7 hydrogen bonds · protein-protein
- A–C · 415 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 7BBA · Structure of the TagL peptidoglycan binding domain from EAEC T6SS · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D3GUV9
- Elsewhere: RCSB PDB 7BBA · PDBe 7BBA · UniProt D3GUV9
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