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Structure of S. pombe yg-box oligomer

Analyse Structure of S. pombe yg-box oligomer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7BB3
Type: protein
Length: 108 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Survival motor neuron-like protein 1,SURVIVAL motor neuron- like protein 1
UniProt: Q09808

Structure

x-ray diffraction · 1 distinct chain · 94% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Survival motor neuron-like protein 1,SURVIVAL motor neuron- like protein 1	protein	54	94% helix, 0% strand	Q09808

Ligands and binding sites

MPD · (4S)-2-methyl-2,4-pentanediol · additive · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 713 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

7BB3 · Structure of S. pombe YG-box oligomer · the same entry in another collection · chain A against A, TM-score 1.00
Q09808 · AlphaFold monomer V2.0 prediction for survival motor neuron-like protein 1 (Q09808) · a predicted model of the same protein · chain A against A, TM-score 0.68

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q09808
Elsewhere: RCSB PDB 7BB3 · PDBe 7BB3 · UniProt Q09808

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