Research workbench
C8(355-600) from the minitrappiii complex
Analyse C8(355-600) from the minitrappiii complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7B6Y
- Type
- protein
- Length
- 208 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- FI18195P1
- UniProt
- Q9VW22
- Pockets
- 4 · best druggability 0.53
Structure
electron microscopy · 1 distinct chain · 81% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | FI18195P1 | protein | 208 | 81% helix, 0% strand | Q9VW22 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 148 | 0.53 | 0.80 | 30 | empty |
| 2 | 140 | 0.47 | 0.78 | 26 | empty |
| 3 | 74 | 0.43 | 0.80 | 17 | empty |
| 4 | 52 | 0.32 | 0.77 | 12 | empty |
Compared structures
- 7B6Y · C8(355-600) from the MiniTRAPPIII complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9VW22
- Elsewhere: RCSB PDB 7B6Y · PDBe 7B6Y · UniProt Q9VW22
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