Research workbench
S. agalactiae busr transcription factor
Analyse S. agalactiae busr transcription factor in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7B5T
- Type
- protein
- Length
- 828 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gntr family transcriptional regulator
- UniProt
- K0JNC6
- Pockets
- 13 · best druggability 0.76
Structure
x-ray diffraction · 4 distinct chains · 49% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gntr family transcriptional regulator | protein | 211 | 49% helix, 13% strand | K0JNC6 |
| B | Gntr family transcriptional regulator | protein | 207 | 50% helix, 14% strand | K0JNC6 |
| D | Gntr family transcriptional regulator | protein | 200 | 50% helix, 16% strand | K0JNC6 |
| C | Gntr family transcriptional regulator | protein | 210 | 47% helix, 12% strand | K0JNC6 |
Pockets
13 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 597 | 0.76 | 0.82 | 63 | empty |
| 2 | 340 | 0.76 | 0.87 | 32 | empty |
| 3 | 529 | 0.75 | 0.83 | 50 | empty |
| 4 | 340 | 0.74 | 0.85 | 28 | empty |
| 5 | 144 | 0.52 | 0.79 | 22 | empty |
Interfaces
6 interfaces between chains.
- A–B · 2274 Ų buried · 17 hydrogen bonds · protein-protein
- D–C · 1952 Ų buried · 26 hydrogen bonds · protein-protein
- B–C · 1773 Ų buried · 18 hydrogen bonds · protein-protein
- A–D · 1687 Ų buried · 25 hydrogen bonds · protein-protein
- A–C · 1681 Ų buried · 17 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 7B5T · S. agalactiae BusR transcription factor · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K0JNC6
- Elsewhere: RCSB PDB 7B5T · PDBe 7B5T · UniProt K0JNC6
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