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Structure of a nanoparticle for a COVID-19 vaccine candidate

Analyse Structure of a nanoparticle for a COVID-19 vaccine candidate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7B3Y
Type: protein
Length: 202 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fibronectin binding PROTEIN,2-dehydro-3- deoxyphosphogluconate…
UniProt: Q9WXS1
Pockets: 1 · best druggability 0.29

Structure

electron microscopy · 1 distinct chain · 50% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Fibronectin binding PROTEIN,2-dehydro-3- deoxyphosphogluconate ALDOLASE/4-hydroxy-2-oxoglutarate aldolase	protein	202	50% helix, 17% strand	Q9WXS1

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.29	0.75	17	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

7B3Y · Structure of a nanoparticle for a COVID-19 vaccine candidate · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9WXS1
Elsewhere: RCSB PDB 7B3Y · PDBe 7B3Y · UniProt Q9WXS1

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