Research workbench
Complex of rice blast (magnaporthe oryzae) effector protein avr-pikf with the hma domain of OSHIPP19 from rice (oryza sativa)
Analyse Complex of rice blast (magnaporthe oryzae) effector protein avr-pikf with the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7B1I
- Type
- protein
- Length
- 155 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- OSIGBA0128P10.9 protein; Avr-pik protein
- UniProt
- Q01IL6, C4B8B8
Structure
x-ray diffraction · 2 distinct chains · 15% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | OSIGBA0128P10.9 protein | protein | 74 | 27% helix, 38% strand | Q01IL6 |
| C | Avr-pik protein | protein | 81 | 4% helix, 47% strand | C4B8B8 |
Interfaces
1 interface between chains.
- B–C · 1102 Ų buried · 25 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7B1I · Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikF with the HMA domain… · the same entry in another collection · chain B against B, TM-score 1.00
- 7BNT · Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikD with a predicted… · a predicted model of the same protein · chain C against C, TM-score 0.98
- 7BNT · Complex of rice blast (magnaporthe oryzae) effector protein avr-pikd with a predicted… · a predicted model of the same protein · chain C against C, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q01IL6
- Every structure of UniProt C4B8B8
- Elsewhere: RCSB PDB 7B1I · PDBe 7B1I · UniProt Q01IL6 · UniProt C4B8B8
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