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Sctv (ssav) cytoplasmic domain

Analyse Sctv (ssav) cytoplasmic domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7AWA
Type: protein
Length: 328 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Secretion system apparatus protein ssav
UniProt: P74856
Pockets: 4 · best druggability 0.74

Structure

electron microscopy · 1 distinct chain · 45% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Secretion system apparatus protein ssav	protein	328	45% helix, 13% strand	P74856

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	94	0.74	0.95	30	empty
2	220	0.57	0.79	31	empty
3	134	0.50	0.79	24	empty
4	81	0.35	0.75	15	empty

Compared structures

7AWA · SctV (SsaV) cytoplasmic domain · the same entry in another collection · chain A against A, TM-score 1.00
P74856 · AlphaFold monomer V2.0 prediction for secretion system apparatus protein ssav (P74856) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P74856
Elsewhere: RCSB PDB 7AWA · PDBe 7AWA · UniProt P74856

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