Research workbench
Crystal structure of nod factor perception ectodomain
Analyse Crystal structure of nod factor perception ectodomain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7AU7
- Type
- protein
- Length
- 203 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SERINE/THREONINE receptor-like kinase nfp
- EC
- 2.7.10.-
- UniProt
- Q0GXS4
- Ligands
- NAG, BMA, MAN
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SERINE/THREONINE receptor-like kinase nfp (EC 2.7.10.-) | protein | 203 | 24% helix, 26% strand | Q0GXS4 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 10 copies · chains A
- BMA · beta-D-mannopyranose · sugar · 2 copies
- MAN · alpha-D-mannopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 114 | 0.44 | 0.77 | 22 | empty |
Modifications
Observed in the structure: 6 glycan, 3 disulfide (N-glycosylation, disulfide).
Compared structures
- 7AU7 · Crystal structure of Nod Factor Perception ectodomain · the same entry in another collection · chain A against A, TM-score 1.00
- Q0GXS4 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE receptor-like kinase nfp (Q0GXS4) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0GXS4
- Elsewhere: RCSB PDB 7AU7 · PDBe 7AU7 · UniProt Q0GXS4
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