Research workbench
Nonameric cytoplasmic domain of sctv from yersinia enterocolitica
Analyse Nonameric cytoplasmic domain of sctv from yersinia enterocolitica in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7ALW
- Type
- protein
- Length
- 6,192 residues
- Chains
- 18
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Low calcium response protein
- UniProt
- Q51875
- Pockets
- 20 · best druggability 0.77
Structure
electron microscopy · 1 distinct chain · 38% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R | Low calcium response protein | protein | 344 | 38% helix, 13% strand | Q51875 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1047 | 0.77 | 0.79 | 92 | empty |
| 2 | 977 | 0.77 | 0.79 | 79 | empty |
| 3 | 1094 | 0.77 | 0.79 | 91 | empty |
| 4 | 1066 | 0.77 | 0.79 | 85 | empty |
| 5 | 1051 | 0.77 | 0.79 | 87 | empty |
Interfaces
36 interfaces between chains.
- K–L · 1734 Ų buried · 22 hydrogen bonds · protein-protein
- G–H · 1734 Ų buried · 24 hydrogen bonds · protein-protein
- A–I · 1733 Ų buried · 22 hydrogen bonds · protein-protein
- Q–R · 1733 Ų buried · 22 hydrogen bonds · protein-protein
- J–R · 1733 Ų buried · 24 hydrogen bonds · protein-protein
Compared structures
- 7ALW · Nonameric cytoplasmic domain of SctV from Yersinia enterocolitica · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q51875
- Elsewhere: RCSB PDB 7ALW · PDBe 7ALW · UniProt Q51875
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