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Complex of human lysozyme with camelid vhh HL6 antibody fragment

Analyse Complex of human lysozyme with camelid vhh HL6 antibody fragment in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1OP9
Type: protein
Length: 251 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: HL6 camel vhh fragment; Lysozyme C
EC: 3.2.1.17
UniProt: P61626
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 2 distinct chains · 23% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	HL6 camel vhh fragment	protein	121	5% helix, 50% strand	—
B	Lysozyme C (EC 3.2.1.17)	protein	130	39% helix, 12% strand	P61626

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.34	0.74	18	empty

Interfaces

1 interface between chains.

A–B · 586 Å² buried · 11 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 5 disulfide (disulfide).

Compared structures

1OP9 · Complex of human lysozyme with camelid VHH HL6 antibody fragment · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P61626
Elsewhere: RCSB PDB 1OP9 · PDBe 1OP9 · UniProt P61626

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