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Structure of drosophila C2-dsl-EGF1

Analyse Structure of drosophila C2-dsl-EGF1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7ALK
Type: protein
Length: 231 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Neurogenic locus protein delta
UniProt: P10041
Ligands: NAG, MAN, BMA, FUC

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Neurogenic locus protein delta	protein	231	0% helix, 41% strand	P10041

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
MAN · alpha-D-mannopyranose · sugar · 2 copies
BMA · beta-D-mannopyranose · sugar · chains A
FUC · alpha-L-fucopyranose · sugar

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 9 disulfide, 3 glycan (disulfide, N-glycosylation).

Compared structures

7ALK · Structure of Drosophila C2-DSL-EGF1 · the same entry in another collection · chain A against A, TM-score 1.00
P10041 · AlphaFold monomer V2.0 prediction for neurogenic locus protein delta (P10041) · a predicted model of the same protein · chain A against A, TM-score 0.80

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P10041
Elsewhere: RCSB PDB 7ALK · PDBe 7ALK · UniProt P10041

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