Research workbench
Crystal structure of the viral rhodopsin OLPVR1 in P21212 space group
Analyse Crystal structure of the viral rhodopsin OLPVR1 in P21212 space group in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7AKY
- Type
- protein
- Length
- 223 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Viral rhodopsin OLPVR1
- UniProt
- F2Y337
- Ligands
- LFA, 97N
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 86% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Viral rhodopsin OLPVR1 | protein | 223 | 86% helix, 0% strand | F2Y337 |
Ligands and binding sites
- LFA · Eicosane · ligand · 21 copies · chains A
- 97N · (2S)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.61 | 0.89 | 15 | 97N |
Modifications
Observed in the structure: 1 modified (nonstandard).
Compared structures
- 7AKY · Crystal structure of the viral rhodopsin OLPVR1 in P21212 space group · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F2Y337
- Elsewhere: RCSB PDB 7AKY · PDBe 7AKY · UniProt F2Y337
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