Research workbench
Crystal structure of E. COLI RNA helicase hrpa-D305A
Analyse Crystal structure of E. COLI RNA helicase hrpa-D305A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7AKP
- Type
- protein
- Length
- 723 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP-dependent RNA helicase hrpa
- EC
- 3.6.4.13
- UniProt
- A0A024L2B5
- Pockets
- 8 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATP-dependent RNA helicase hrpa (EC 3.6.4.13) | protein | 723 | 41% helix, 19% strand | A0A024L2B5 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1152 | 0.83 | 0.84 | 111 | empty |
| 2 | 305 | 0.62 | 0.79 | 34 | empty |
| 3 | 209 | 0.59 | 0.81 | 34 | empty |
| 4 | 130 | 0.49 | 0.79 | 26 | empty |
| 5 | 136 | 0.46 | 0.77 | 20 | empty |
Compared structures
- 7AKP · Crystal structure of E. coli RNA helicase HrpA-D305A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A024L2B5
- Elsewhere: RCSB PDB 7AKP · PDBe 7AKP · UniProt A0A024L2B5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.