Research workbench
Nrd-hepn domains (N-terminal truncation) of escherichia COLI rnla endoribonuclease
Analyse Nrd-hepn domains (N-terminal truncation) of escherichia COLI rnla… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7AEX
- Type
- protein
- Length
- 267 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MRNA endoribonuclease toxin ls
- EC
- 3.1.-.-
- UniProt
- P52129
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 57% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MRNA endoribonuclease toxin ls (EC 3.1.-.-) | protein | 267 | 57% helix, 15% strand | P52129 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 183 | 0.51 | 0.77 | 23 | empty |
| 2 | 77 | 0.35 | 0.76 | 18 | empty |
Compared structures
- 7AEX · NRD-HEPN domains (N-terminal truncation) of Escherichia coli RnlA endoribonuclease · the same entry in another collection · chain A against A, TM-score 1.00
- P52129 · AlphaFold monomer V2.0 prediction for mRNA endoribonuclease toxin ls (P52129) · a predicted model of the same protein · chain A against A, TM-score 0.57
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52129
- Elsewhere: RCSB PDB 7AEX · PDBe 7AEX · UniProt P52129
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.