Research workbench
Solution structure of a DNA duplex containing A:G mismatch. D(GCTTCAGTCGT):D(ACGACGGAAGC)
Analyse Solution structure of a DNA duplex containing A:G mismatch.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ONM
- Type
- DNA
- Length
- 22 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*CP*TP*TP*CP*AP*GP*TP*CP*GP*T)-3'; 5'-D(*AP*CP*GP*AP*CP*GP*GP*AP*AP*GP*C)-3'
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*GP*CP*TP*TP*CP*AP*GP*TP*CP*GP*T)-3' | dna | 11 | — | — |
| B | 5'-D(*AP*CP*GP*AP*CP*GP*GP*AP*AP*GP*C)-3' | dna | 11 | — | — |
Interfaces
1 interface between chains.
- A–B · 483 Ų buried · 50 hydrogen bonds · nucleic-nucleic
Compared structures
- 1ONM · Solution Structure of a DNA duplex containing A:G mismatch. d(GCTTCAGTCGT):d(ACGACGGAAGC) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1ONM · PDBe 1ONM
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