Research workbench
RNA duplex with a cytosine bulge in complex with berberine
Analyse RNA duplex with a cytosine bulge in complex with berberine in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7A3Y
- Type
- RNA
- Length
- 25 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA-a chain a; RNA-a chain B
- Ligands
- BER
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA-a chain a | rna | 13 | — | — |
| B | RNA-a chain B | rna | 12 | — | — |
Ligands and binding sites
- BER · Berberine · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 581 Ų buried · 57 hydrogen bonds · nucleic-nucleic
Compared structures
- 7A3Y · RNA duplex with a cytosine bulge in complex with berberine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7A3Y · PDBe 7A3Y
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.