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Crystal structure of dimethylated rsl-N23H (rsl-B3) in complex with CUCURBIT[7]URIL and zinc
Analyse Crystal structure of dimethylated rsl-N23H (rsl-B3) in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ZUM
- Type
- protein
- Length
- 89 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fucose-binding lectin protein
- UniProt
- A0A0S4TLR1
- Ligands
- BDF, QQ7, ZN, NA
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 67% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fucose-binding lectin protein | protein | 89 | 0% helix, 67% strand | A0A0S4TLR1 |
Ligands and binding sites
- BDF · beta-D-fructopyranose · ligand · 2 copies · chains A
- QQ7 · cucurbit[7]uril · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- NA · Sodium ion · metal · 2 copies
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 4 modified (methylation, nonstandard).
Compared structures
- 6ZUM · Crystal structure of dimethylated RSL-N23H (RSL-B3) in complex with cucurbit[7]uril and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0S4TLR1
- Elsewhere: RCSB PDB 6ZUM · PDBe 6ZUM · UniProt A0A0S4TLR1
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