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Structure of crocagin biosynthetic protein cgnb

Analyse Structure of crocagin biosynthetic protein cgnb in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6ZSV
Type: protein
Length: 614 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: A0A0K1EBZ5
Ligands: ZN
Pockets: 2 · best druggability 0.66

Structure

x-ray diffraction · 2 distinct chains · 30% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	304	31% helix, 31% strand	A0A0K1EBZ5
B	Uncharacterized protein	protein	310	29% helix, 31% strand	A0A0K1EBZ5

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	389	0.66	0.79	34	empty
2	383	0.65	0.79	32	empty

Interfaces

1 interface between chains.

A–B · 39 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

6ZSV · Structure of crocagin biosynthetic protein CgnB · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0K1EBZ5
Elsewhere: RCSB PDB 6ZSV · PDBe 6ZSV · UniProt A0A0K1EBZ5

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