Research workbench

Crystal structure of chaetomium thermophilum glycerol kinase in P3221 space group

Analyse Crystal structure of chaetomium thermophilum glycerol kinase in P3221 space… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6ZQ8
Type: protein
Length: 1,021 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycerol kinase-like protein
UniProt: G0SAG9
Pockets: 9 · best druggability 0.85

Structure

x-ray diffraction · 2 distinct chains · 36% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Glycerol kinase-like protein	protein	512	37% helix, 22% strand	G0SAG9
A	Glycerol kinase-like protein	protein	509	35% helix, 19% strand	G0SAG9

Pockets

9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1016	0.85	0.85	112	empty
2	458	0.63	0.76	40	empty
3	52	0.61	0.92	19	empty
4	164	0.47	0.76	29	empty
5	147	0.46	0.77	25	empty

Interfaces

1 interface between chains.

B–A · 731 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

6ZQ8 · Crystal structure of Chaetomium thermophilum Glycerol Kinase in P3221 space group · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G0SAG9
Elsewhere: RCSB PDB 6ZQ8 · PDBe 6ZQ8 · UniProt G0SAG9

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.