Research workbench
Crystal structure of chaetomium thermophilum glycerol kinase in I222 space group
Analyse Crystal structure of chaetomium thermophilum glycerol kinase in I222 space group in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ZQ7
- Type
- protein
- Length
- 509 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycerol kinase-like protein
- UniProt
- G0SAG9
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycerol kinase-like protein | protein | 509 | 37% helix, 22% strand | G0SAG9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 505 | 0.68 | 0.78 | 48 | GOL, EDO |
| 2 | 162 | 0.53 | 0.79 | 31 | empty |
| 3 | 79 | 0.34 | 0.75 | 11 | empty |
Compared structures
- 6ZQ7 · Crystal structure of Chaetomium thermophilum Glycerol Kinase in I222 space group · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G0SAG9
- Elsewhere: RCSB PDB 6ZQ7 · PDBe 6ZQ7 · UniProt G0SAG9
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