Research workbench

Kinesin binding protein (kbp)

Analyse Kinesin binding protein (kbp) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6ZPG
Type: protein
Length: 463 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Kif-binding protein
UniProt: Q96EK5
Pockets: 11 · best druggability 0.68

Structure

electron microscopy · 1 distinct chain · 78% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Kif-binding protein	protein	463	78% helix, 0% strand	Q96EK5

Pockets

11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	665	0.68	0.76	65	empty
2	202	0.58	0.80	28	empty
3	275	0.57	0.77	29	empty
4	92	0.54	0.84	21	empty
5	141	0.54	0.81	28	empty

Compared structures

6ZPG · Kinesin binding protein (KBP) · the same entry in another collection · chain A against A, TM-score 1.00
Q96EK5 · AlphaFold monomer V2.0 prediction for kif-binding protein (Q96EK5) · a predicted model of the same protein · chain A against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96EK5
Elsewhere: RCSB PDB 6ZPG · PDBe 6ZPG · UniProt Q96EK5

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