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Structure of the cysteine-rich domain of piggymac, a domesticated piggybac transposase involved in programmed genome rearrangements

Analyse Structure of the cysteine-rich domain of piggymac, a domesticated piggybac… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6ZOP
Type: protein
Length: 84 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DDE_TNP_1_7 domain-containing protein
UniProt: A0DFJ7
Ligands: ZN
Pockets: 1 · best druggability 0.41

Structure

solution nmr · 1 distinct chain · 23% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DDE_TNP_1_7 domain-containing protein	protein	84	23% helix, 19% strand	A0DFJ7

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	127	0.41	0.75	21	empty

Compared structures

6ZOP · Structure of the cysteine-rich domain of PiggyMac, a domesticated PiggyBac transposase… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0DFJ7
Elsewhere: RCSB PDB 6ZOP · PDBe 6ZOP · UniProt A0DFJ7

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