Research workbench
Structure of the shigella mxih needle filament attached to the basal body
Analyse Structure of the shigella mxih needle filament attached to the basal body in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ZNI
- Type
- protein
- Length
- 1,886 residues
- Chains
- 23
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein mxih
- UniProt
- P0A223
- Pockets
- 20 · best druggability 0.73
Structure
electron microscopy · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W | Protein mxih | protein | 82 | 77% helix, 0% strand | P0A223 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.73 | 0.98 | 15 | empty |
| 2 | 56 | 0.72 | 0.98 | 15 | empty |
| 3 | 54 | 0.71 | 0.98 | 14 | empty |
| 4 | 64 | 0.71 | 0.96 | 13 | empty |
| 5 | 52 | 0.71 | 0.98 | 14 | empty |
Interfaces
69 interfaces between chains.
- Q–V · 924 Ų buried · 12 hydrogen bonds · protein-protein
- A–Q · 912 Ų buried · 10 hydrogen bonds · protein-protein
- A–F · 909 Ų buried · 9 hydrogen bonds · protein-protein
- B–G · 904 Ų buried · 9 hydrogen bonds · protein-protein
- M–R · 903 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6ZNI · Structure of the Shigella MxiH needle filament attached to the basal body · the same entry in another collection · chain W against W, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A223
- Elsewhere: RCSB PDB 6ZNI · PDBe 6ZNI · UniProt P0A223
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