Research workbench
Structure of the salmonella prgi needle filament attached to the basal body
Analyse Structure of the salmonella prgi needle filament attached to the basal body in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ZNH
- Type
- protein
- Length
- 1,817 residues
- Chains
- 23
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Prgi
- UniProt
- P41784
- Pockets
- 20 · best druggability 0.60
Structure
electron microscopy · 1 distinct chain · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W | Prgi | protein | 79 | 78% helix, 0% strand | P41784 |
Pockets
20 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 327 | 0.60 | 0.78 | 56 | empty |
| 2 | 320 | 0.57 | 0.76 | 39 | empty |
| 3 | 310 | 0.56 | 0.76 | 40 | empty |
| 4 | 323 | 0.55 | 0.75 | 44 | empty |
| 5 | 311 | 0.55 | 0.75 | 40 | empty |
Interfaces
69 interfaces between chains.
- M–S · 883 Ų buried · 7 hydrogen bonds · protein-protein
- E–K · 880 Ų buried · 7 hydrogen bonds · protein-protein
- F–M · 880 Ų buried · 7 hydrogen bonds · protein-protein
- C–I · 880 Ų buried · 5 hydrogen bonds · protein-protein
- Q–W · 879 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6ZNH · Structure of the Salmonella PrgI needle filament attached to the basal body · the same entry in another collection · chain W against W, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41784
- Elsewhere: RCSB PDB 6ZNH · PDBe 6ZNH · UniProt P41784
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