Research workbench

Cytochrome C heme lyase ccmf

Analyse Cytochrome C heme lyase ccmf in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6ZMQ
Type: protein
Length: 589 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C-type biogenesis protein ccmf
UniProt: Q72IU4
Ligands: PTY, HEM
Pockets: 8 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 61% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C-type biogenesis protein ccmf	protein	589	61% helix, 8% strand	Q72IU4

Ligands and binding sites

PTY · Phosphatidylethanolamine · ligand · 4 copies · chains A
HEM · Protoporphyrin IX containing Fe · ligand · chains A
LMT · Dodecyl-beta-D-maltoside · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	756	0.86	0.89	72	HEM, LMT, PTY
2	370	0.66	0.80	40	empty
3	218	0.52	0.76	25	empty
4	107	0.40	0.75	19	empty
5	78	0.38	0.78	14	empty

Compared structures

6ZMQ · Cytochrome c Heme Lyase CcmF · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q72IU4
Elsewhere: RCSB PDB 6ZMQ · PDBe 6ZMQ · UniProt Q72IU4

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.