Research workbench

Open-open state of the BT1762-BT1763 levan transport system

Analyse Open-open state of the BT1762-BT1763 levan transport system in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6ZLT
Type: protein
Length: 1,485 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Susd homolog; Susc homolog
UniProt: Q8A6W4, Q8A6W3
Pockets: 19 · best druggability 0.86

Structure

electron microscopy · 2 distinct chains · 18% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Susd homolog	protein	552	37% helix, 5% strand	Q8A6W4
B	Susc homolog	protein	933	7% helix, 39% strand	Q8A6W3

Pockets

19 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	331	0.86	0.95	54	empty
2	403	0.77	0.87	70	empty
3	538	0.74	0.82	57	empty
4	514	0.73	0.82	52	empty
5	133	0.70	0.90	26	empty

Interfaces

1 interface between chains.

A–B · 2776 Å² buried · 31 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

6ZLT · Open-open state of the Bt1762-Bt1763 levan transport system · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8A6W4
Every structure of UniProt Q8A6W3
Elsewhere: RCSB PDB 6ZLT · PDBe 6ZLT · UniProt Q8A6W4 · UniProt Q8A6W3

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