Research workbench
Calcium ATPase-1 from listeria monocytogenes in complex with bef
Analyse Calcium ATPase-1 from listeria monocytogenes in complex with bef in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ZHF
- Type
- protein
- Length
- 880 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calcium-transporting ATPase
- UniProt
- A0A1C7PY84
- Ligands
- BEF, MG
- Pockets
- 14 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calcium-transporting ATPase | protein | 880 | 46% helix, 13% strand | A0A1C7PY84 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
14 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.80 | 0.96 | 26 | empty |
| 2 | 763 | 0.78 | 0.82 | 66 | empty |
| 3 | 488 | 0.67 | 0.79 | 42 | empty |
| 4 | 125 | 0.66 | 0.88 | 25 | empty |
| 5 | 338 | 0.65 | 0.80 | 37 | empty |
Compared structures
- 6ZHF · Calcium ATPase-1 from Listeria monocytogenes in complex with BeF · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1C7PY84
- Elsewhere: RCSB PDB 6ZHF · PDBe 6ZHF · UniProt A0A1C7PY84
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