Research workbench
Crystal structure of VIRB8-like orfg central domain of streptococcus thermophilus ICEST3; a putative assembly factor of a gram positive conjugative type IV secretion system.
Analyse Crystal structure of VIRB8-like orfg central domain of streptococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ZGN
- Type
- protein
- Length
- 101 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative transfer protein
- UniProt
- Q70CA4
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative transfer protein | protein | 101 | 26% helix, 40% strand | Q70CA4 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.34 | 0.73 | 14 | empty |
Compared structures
- 6ZGN · Crystal structure of VirB8-like OrfG central domain of Streptococcus thermophilus ICESt3… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q70CA4
- Elsewhere: RCSB PDB 6ZGN · PDBe 6ZGN · UniProt Q70CA4
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