Research workbench
Human adenovirus serotype D10 fiberknob protein
Analyse Human adenovirus serotype D10 fiberknob protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ZC5
- Type
- protein
- Length
- 2,211 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fiber
- UniProt
- B5BQ05
- Pockets
- 20 · best druggability 0.82
Structure
x-ray diffraction · 5 distinct chains · 2% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, H, I, J, L | Fiber | protein | 183 | 3% helix, 40% strand | B5BQ05 |
| D | Fiber | protein | 184 | 0% helix, 35% strand | B5BQ05 |
| E, F | Fiber | protein | 186 | 2% helix, 39% strand | B5BQ05 |
| G | Fiber | protein | 189 | 2% helix, 39% strand | B5BQ05 |
| K | Fiber | protein | 185 | 3% helix, 33% strand | B5BQ05 |
Pockets
20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 796 | 0.82 | 0.85 | 84 | empty |
| 2 | 771 | 0.81 | 0.85 | 73 | empty |
| 3 | 402 | 0.74 | 0.84 | 51 | empty |
| 4 | 392 | 0.73 | 0.84 | 38 | empty |
| 5 | 370 | 0.72 | 0.84 | 42 | empty |
Interfaces
25 interfaces between chains.
- E–F · 1148 Ų buried · 16 hydrogen bonds · protein-protein
- G–I · 1093 Ų buried · 16 hydrogen bonds · protein-protein
- A–B · 1082 Ų buried · 18 hydrogen bonds · protein-protein
- G–H · 1079 Ų buried · 16 hydrogen bonds · protein-protein
- A–C · 1066 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 6ZC5 · Human Adenovirus serotype D10 FiberKnob protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5BQ05
- Elsewhere: RCSB PDB 6ZC5 · PDBe 6ZC5 · UniProt B5BQ05
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