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Fluorine labeled ipns S55C in complex with fe and acv under anaerobic conditions.

Analyse Fluorine labeled ipns S55C in complex with fe and acv under anaerobic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6ZAM
Type
protein
Length
328 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Isopenicillin N synthase
EC
1.21.3.1
UniProt
P05326
Ligands
W6X, W6Z, ACV, FE, SO4
Pockets
1 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 21% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AIsopenicillin N synthase (EC 1.21.3.1)protein32830% helix, 21% strandP05326

Ligands and binding sites

  • W6X · 1,1,1-tris(fluoranyl)propan-2-one · ligand · chains A
  • W6Z · 1,1,1-tris(fluoranyl)propane-2,2-diol · ligand · chains A
  • ACV · L-D-(A-aminoadipoyl)-L-cysteinyl-D-valine · ligand · chains A
  • FE · Fe (III) ion · metal · chains A
  • SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
15300.820.8866ACV

Modifications

Observed in the structure: 2 covalent (covalent ligand).

Compared structures

  • 6ZAM · Fluorine labeled IPNS S55C in complex with Fe and ACV under anaerobic conditions. · the same entry in another collection · chain A against A, TM-score 1.00
  • P05326 · AlphaFold monomer V2.0 prediction for isopenicillin N synthase (P05326) · a predicted model of the same protein · chain A against A, TM-score 0.99

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