Research workbench
Human picobirnavirus ht-cp vlp
Analyse Human picobirnavirus ht-cp vlp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Z8E
- Type
- protein
- Length
- 1,018 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein precursor
- UniProt
- Q50LE5
- Pockets
- 12 · best druggability 0.70
Structure
electron microscopy · 2 distinct chains · 34% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein precursor | protein | 506 | 34% helix, 19% strand | Q50LE5 |
| B | Capsid protein precursor | protein | 512 | 35% helix, 20% strand | Q50LE5 |
Pockets
12 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 275 | 0.70 | 0.85 | 34 | empty |
| 2 | 61 | 0.58 | 0.90 | 20 | empty |
| 3 | 140 | 0.53 | 0.81 | 22 | empty |
| 4 | 252 | 0.52 | 0.76 | 44 | empty |
| 5 | 221 | 0.48 | 0.75 | 42 | empty |
Interfaces
1 interface between chains.
- A–B · 5601 Ų buried · 75 hydrogen bonds · protein-protein
Compared structures
- 6Z8E · Human Picobirnavirus Ht-CP VLP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q50LE5
- Elsewhere: RCSB PDB 6Z8E · PDBe 6Z8E · UniProt Q50LE5
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