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The atomic structure of the hadvf-41 penton base in solution

Analyse The atomic structure of the hadvf-41 penton base in solution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6Z7Q
Type: protein
Length: 2,080 residues
Chains: 5
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Penton protein
UniProt: Q9QAH8
Pockets: 20 · best druggability 0.81

Structure

electron microscopy · 1 distinct chain · 7% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E	Penton protein	protein	416	7% helix, 17% strand	Q9QAH8

Pockets

20 pockets found on a 1 Å grid, 17 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	831	0.81	0.83	63	empty
2	142	0.78	0.96	34	empty
3	153	0.78	0.95	34	empty
4	576	0.77	0.84	48	empty
5	544	0.77	0.84	51	empty

Interfaces

10 interfaces between chains.

C–D · 3103 Å² buried · 18 hydrogen bonds · protein-protein
B–C · 3100 Å² buried · 18 hydrogen bonds · protein-protein
A–B · 3097 Å² buried · 17 hydrogen bonds · protein-protein
D–E · 3095 Å² buried · 20 hydrogen bonds · protein-protein
A–E · 3083 Å² buried · 17 hydrogen bonds · protein-protein

Compared structures

6Z7Q · The atomic structure of the HAdVF-41 penton base in solution · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9QAH8
Elsewhere: RCSB PDB 6Z7Q · PDBe 6Z7Q · UniProt Q9QAH8

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