Research workbench
Crystal structure of the HK97 bacteriophage large terminase
Analyse Crystal structure of the HK97 bacteriophage large terminase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Z6D
- Type
- protein
- Length
- 479 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Terminase large subunit
- UniProt
- Q9MCT1
- Ligands
- BR
- Pockets
- 5 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Terminase large subunit | protein | 479 | 40% helix, 20% strand | Q9MCT1 |
Ligands and binding sites
- BR · Bromide ion · ion · 17 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 129 | 0.42 | 0.76 | 24 | empty |
| 2 | 103 | 0.37 | 0.74 | 17 | BR |
| 3 | 67 | 0.36 | 0.77 | 15 | empty |
| 4 | 69 | 0.33 | 0.75 | 20 | BR |
| 5 | 54 | 0.27 | 0.74 | 11 | empty |
Compared structures
- 6Z6D · Crystal structure of the HK97 bacteriophage large terminase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9MCT1
- Elsewhere: RCSB PDB 6Z6D · PDBe 6Z6D · UniProt Q9MCT1
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