Research workbench
Arrangement of the matrix protein M1 in influenza A/HONG KONG/1/1968 vlps (HA,NA,M1,M2)
Analyse Arrangement of the matrix protein M1 in influenza A/HONG KONG/1/1968 vlps… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Z5J
- Type
- protein
- Length
- 942 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Matrix protein 1
- UniProt
- F0TTD6
- Pockets
- 9 · best druggability 0.82
Structure
electron microscopy · 1 distinct chain · 68% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E, F, D, C, B, A | Matrix protein 1 | protein | 157 | 68% helix, 0% strand | F0TTD6 |
Pockets
9 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1016 | 0.82 | 0.83 | 120 | empty |
| 2 | 844 | 0.76 | 0.80 | 88 | empty |
| 3 | 413 | 0.73 | 0.83 | 63 | empty |
| 4 | 105 | 0.62 | 0.88 | 23 | empty |
| 5 | 145 | 0.55 | 0.81 | 28 | empty |
Interfaces
9 interfaces between chains.
- E–F · 499 Ų buried · 3 hydrogen bonds · protein-protein
- E–D · 492 Ų buried · 2 hydrogen bonds · protein-protein
- C–B · 445 Ų buried · 2 hydrogen bonds · protein-protein
- B–A · 382 Ų buried · 2 hydrogen bonds · protein-protein
- D–B · 235 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6Z5J · Arrangement of the matrix protein M1 in influenza A/Hong Kong/1/1968 VLPs (HA,NA,M1,M2) · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F0TTD6
- Elsewhere: RCSB PDB 6Z5J · PDBe 6Z5J · UniProt F0TTD6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.