Research workbench
Cymd monoaromatic hydrocarbon channel
Analyse Cymd monoaromatic hydrocarbon channel in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Z34
- Type
- protein
- Length
- 382 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cymd
- UniProt
- O33458
- Pockets
- 3 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 61% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cymd | protein | 382 | 9% helix, 61% strand | O33458 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1072 | 0.81 | 0.82 | 93 | empty |
| 2 | 107 | 0.77 | 0.96 | 20 | empty |
| 3 | 380 | 0.68 | 0.81 | 52 | empty |
Compared structures
- 6Z34 · CymD monoaromatic hydrocarbon channel · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O33458
- Elsewhere: RCSB PDB 6Z34 · PDBe 6Z34 · UniProt O33458
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