Research workbench
Crystal structure of the cytoplasmic domain of flhb from shewanella putrefaciens
Analyse Crystal structure of the cytoplasmic domain of flhb from shewanella putrefaciens in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Z0W
- Type
- protein
- Length
- 494 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellar biosynthetic protein flhb
- UniProt
- A4Y8K1
- Pockets
- 3 · best druggability 0.63
Structure
x-ray diffraction · 4 distinct chains · 42% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flagellar biosynthetic protein flhb | protein | 124 | 39% helix, 19% strand | A4Y8K1 |
| B | Flagellar biosynthetic protein flhb | protein | 120 | 42% helix, 19% strand | A4Y8K1 |
| C | Flagellar biosynthetic protein flhb | protein | 129 | 44% helix, 16% strand | A4Y8K1 |
| D | Flagellar biosynthetic protein flhb | protein | 121 | 42% helix, 17% strand | A4Y8K1 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 500 | 0.63 | 0.76 | 54 | empty |
| 2 | 472 | 0.61 | 0.75 | 50 | empty |
| 3 | 268 | 0.51 | 0.74 | 25 | empty |
Interfaces
4 interfaces between chains.
- A–C · 673 Ų buried · 2 hydrogen bonds · protein-protein
- B–D · 631 Ų buried · 3 hydrogen bonds · protein-protein
- A–D · 509 Ų buried · 11 hydrogen bonds · protein-protein
- B–C · 473 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 6Z0W · Crystal structure of the cytoplasmic domain of FlhB from Shewanella putrefaciens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4Y8K1
- Elsewhere: RCSB PDB 6Z0W · PDBe 6Z0W · UniProt A4Y8K1
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