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Crystal structure of laccase from pediococcus acidilactici PP5930 (hepes pH 7.5)
Analyse Crystal structure of laccase from pediococcus acidilactici PP5930 (hepes pH 7.5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Z0K
- Type
- protein
- Length
- 472 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative multicopper oxidase mco
- UniProt
- D2EK17
- Ligands
- CU
- Pockets
- 4 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative multicopper oxidase mco | protein | 472 | 7% helix, 42% strand | D2EK17 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 120 | 0.43 | 0.76 | 21 | empty |
| 2 | 95 | 0.42 | 0.78 | 14 | empty |
| 3 | 67 | 0.32 | 0.75 | 17 | empty |
| 4 | 53 | 0.25 | 0.73 | 22 | empty |
Compared structures
- 6Z0K · Crystal structure of laccase from Pediococcus acidilactici Pp5930 (Hepes pH 7.5) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D2EK17
- Elsewhere: RCSB PDB 6Z0K · PDBe 6Z0K · UniProt D2EK17
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