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Crystal structure of laccase from pediococcus acidilactici PA5930 (tris-hcl pH 8.5)

Analyse Crystal structure of laccase from pediococcus acidilactici PA5930 (tris-hcl pH… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6Z0J
Type: protein
Length: 461 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative multicopper oxidase mco
UniProt: D2EK17
Ligands: CU
Pockets: 5 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative multicopper oxidase mco	protein	461	7% helix, 43% strand	D2EK17

Ligands and binding sites

CU · Copper (II) ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	74	0.47	0.82	16	empty
2	74	0.39	0.79	14	empty
3	85	0.38	0.76	14	empty
4	86	0.34	0.74	15	empty
5	58	0.30	0.75	20	empty

Compared structures

6Z0J · Crystal structure of laccase from Pediococcus acidilactici Pa5930 (Tris-HCl pH 8.5) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D2EK17
Elsewhere: RCSB PDB 6Z0J · PDBe 6Z0J · UniProt D2EK17

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