Research workbench
Crystal structure of the membrane pseudokinase YUKC/ESSB from bacillus subtilis T7SS
Analyse Crystal structure of the membrane pseudokinase YUKC/ESSB from bacillus subtilis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6Z0F
- Type
- protein
- Length
- 753 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Esx secretion system protein yukc
- UniProt
- P71070
- Pockets
- 11 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 59% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Esx secretion system protein yukc | protein | 384 | 59% helix, 11% strand | P71070 |
| B | Esx secretion system protein yukc | protein | 369 | 59% helix, 11% strand | P71070 |
Pockets
11 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 637 | 0.78 | 0.83 | 36 | empty |
| 2 | 251 | 0.51 | 0.75 | 25 | empty |
| 3 | 134 | 0.42 | 0.76 | 20 | empty |
| 4 | 74 | 0.38 | 0.78 | 18 | empty |
| 5 | 68 | 0.37 | 0.78 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 2555 Ų buried · 33 hydrogen bonds · protein-protein
Compared structures
- 6Z0F · Crystal structure of the membrane pseudokinase YukC/EssB from Bacillus subtilis T7SS · the same entry in another collection · chain A against A, TM-score 1.00
- P71070 · AlphaFold monomer V2.0 prediction for esx secretion system protein yukc (P71070) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P71070
- Elsewhere: RCSB PDB 6Z0F · PDBe 6Z0F · UniProt P71070
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